IL_5D8H_001
3D structure
- PDB id
- 5D8H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYSTAL STRUCTURE OF THE BASE OF THE RIBOSOMAL P STALK FROM METHANOCOCCUS JANNASCHII WITH ANTIBIOTIC THIOSTREPTON
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CUAAGACAG*UCGAG
- Length
- 14 nucleotides
- Bulged bases
- 5D8H|1|A|A|1156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_99692.1
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L-L
- Number of instances in this motif group
- 5
Unit IDs
5D8H|1|A|C|1153
5D8H|1|A|U|1154
5D8H|1|A|A|1155
5D8H|1|A|A|1156
5D8H|1|A|G|1157
5D8H|1|A|A|1158
5D8H|1|A|C|1159
5D8H|1|A|A|1160
5D8H|1|A|G|1161
*
5D8H|1|A|U|1218
5D8H|1|A|C|1219
5D8H|1|A|G|1220
5D8H|1|A|A|1221
5D8H|1|A|G|1222
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain B
- 50S ribosomal protein L10
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