IL_5DAT_058

3D structure

PDB id

5DAT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing eIF5A

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CAG*CG

Length

5 nucleotides

Bulged bases

5DAT|1|1|A|1386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DAT_058 not in the Motif Atlas

Homologous match to IL_5TBW_058

Geometric discrepancy: 0.0736

The information below is about IL_5TBW_058

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

5DAT|1|1|C|1385
5DAT|1|1|A|1386
5DAT|1|1|G|1387
*
5DAT|1|1|C|1420
5DAT|1|1|G|1421

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain L4

60S ribosomal protein L4-A

Chain L6

60S ribosomal protein L6-A

Chain O2

60S ribosomal protein L32