3D structure

PDB id
5DAT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex of yeast 80S ribosome with hypusine-containing eIF5A
Experimental method
X-RAY DIFFRACTION
Resolution
3.15 Å

Loop

Sequence
CAG*CG
Length
5 nucleotides
Bulged bases
5DAT|1|1|A|1386
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5DAT_058 not in the Motif Atlas
Homologous match to IL_5TBW_058
Geometric discrepancy: 0.0736
The information below is about IL_5TBW_058
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_31462.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
127

Unit IDs

5DAT|1|1|C|1385
5DAT|1|1|A|1386
5DAT|1|1|G|1387
*
5DAT|1|1|C|1420
5DAT|1|1|G|1421

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain 4
5.8S ribosomal RNA; 5.8S rRNA
Chain L4
60S ribosomal protein L4-A
Chain L6
60S ribosomal protein L6-A
Chain O2
60S ribosomal protein L32

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3502 s