IL_5DAT_169

3D structure

PDB id

5DAT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing eIF5A

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

UUGGCCGGUC*GGAUUUCCAA

Length

20 nucleotides

Bulged bases

5DAT|1|2|G|656

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DAT|1|2|U|649
5DAT|1|2|U|650
5DAT|1|2|G|651
5DAT|1|2|G|652
5DAT|1|2|C|653
5DAT|1|2|C|654
5DAT|1|2|G|655
5DAT|1|2|G|656
5DAT|1|2|U|657
5DAT|1|2|C|658
*
5DAT|1|2|G|676
5DAT|1|2|G|677
5DAT|1|2|A|678
5DAT|1|2|U|679
5DAT|1|2|U|680
5DAT|1|2|U|681
5DAT|1|2|C|682
5DAT|1|2|C|683
5DAT|1|2|A|684
5DAT|1|2|A|685

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D2

40S ribosomal protein S22-A

Chain S4

40S ribosomal protein S4-A

Chain S9

40S ribosomal protein S9-A