IL_5DAT_172

3D structure

PDB id

5DAT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing eIF5A

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GAAAAAAUUA*UAUAUUAGC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DAT|1|2|G|751
5DAT|1|2|A|752
5DAT|1|2|A|753
5DAT|1|2|A|754
5DAT|1|2|A|755
5DAT|1|2|A|756
5DAT|1|2|A|757
5DAT|1|2|U|758
5DAT|1|2|U|759
5DAT|1|2|A|760
*
5DAT|1|2|U|790
5DAT|1|2|A|791
5DAT|1|2|U|792
5DAT|1|2|A|793
5DAT|1|2|U|794
5DAT|1|2|U|795
5DAT|1|2|A|796
5DAT|1|2|G|797
5DAT|1|2|C|798

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C1

40S ribosomal protein S11-A

Chain D2

40S ribosomal protein S22-A

Chain S4

40S ribosomal protein S4-A

Chain S9

40S ribosomal protein S9-A