IL_5DAT_173

3D structure

PDB id

5DAT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing eIF5A

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

ACGUUU*AUCGU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DAT_173 not in the Motif Atlas

Homologous match to IL_8P9A_416

Geometric discrepancy: 0.5335

The information below is about IL_8P9A_416

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DAT|1|2|A|817
5DAT|1|2|C|818
5DAT|1|2|G|819
5DAT|1|2|U|820
5DAT|1|2|U|821
5DAT|1|2|U|822
*
5DAT|1|2|A|850
5DAT|1|2|U|851
5DAT|1|2|C|852
5DAT|1|2|G|853
5DAT|1|2|U|854

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain M9

60S ribosomal protein L19-A

Chain S7

40S ribosomal protein S7-A