IL_5DAT_209
3D structure
- PDB id
- 5DAT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with hypusine-containing eIF5A
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- GGGAUA*UUCAAC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5DAT_209 not in the Motif Atlas
- Homologous match to IL_4V88_462
- Geometric discrepancy: 0.099
- The information below is about IL_4V88_462
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_82488.1
- Basepair signature
- cWW-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
5DAT|1|2|G|1540
5DAT|1|2|G|1541
5DAT|1|2|G|1542
5DAT|1|2|A|1543
5DAT|1|2|U|1544
5DAT|1|2|A|1545
*
5DAT|1|2|U|1566
5DAT|1|2|U|1567
5DAT|1|2|C|1568
5DAT|1|2|A|1569
5DAT|1|2|A|1570
5DAT|1|2|C|1571
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain C8
- 40S ribosomal protein S18-A
- Chain C9
- 40S ribosomal protein S19-A
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