IL_5DAT_209

3D structure

PDB id

5DAT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing eIF5A

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GGGAUA*UUCAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DAT_209 not in the Motif Atlas

Homologous match to IL_4V88_462

Geometric discrepancy: 0.099

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5DAT|1|2|G|1540
5DAT|1|2|G|1541
5DAT|1|2|G|1542
5DAT|1|2|A|1543
5DAT|1|2|U|1544
5DAT|1|2|A|1545
*
5DAT|1|2|U|1566
5DAT|1|2|U|1567
5DAT|1|2|C|1568
5DAT|1|2|A|1569
5DAT|1|2|A|1570
5DAT|1|2|C|1571

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C8

40S ribosomal protein S18-A

Chain C9

40S ribosomal protein S19-A