3D structure

PDB id
5DAT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex of yeast 80S ribosome with hypusine-containing eIF5A
Experimental method
X-RAY DIFFRACTION
Resolution
3.15 Å

Loop

Sequence
GGGAUA*UUCAAC
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5DAT_209 not in the Motif Atlas
Homologous match to IL_4V88_462
Geometric discrepancy: 0.099
The information below is about IL_4V88_462
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_82488.1
Basepair signature
cWW-tSH-tSH-tHS-cWW-cWW
Number of instances in this motif group
7

Unit IDs

5DAT|1|2|G|1540
5DAT|1|2|G|1541
5DAT|1|2|G|1542
5DAT|1|2|A|1543
5DAT|1|2|U|1544
5DAT|1|2|A|1545
*
5DAT|1|2|U|1566
5DAT|1|2|U|1567
5DAT|1|2|C|1568
5DAT|1|2|A|1569
5DAT|1|2|A|1570
5DAT|1|2|C|1571

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain C8
40S ribosomal protein S18-A
Chain C9
40S ribosomal protein S19-A

Coloring options:


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