IL_5DAT_257

3D structure

PDB id

5DAT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing eIF5A

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CUGAUG*CGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DAT_257 not in the Motif Atlas

Geometric match to IL_5TBW_026

Geometric discrepancy: 0.0807

The information below is about IL_5TBW_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5DAT|1|5|C|758
5DAT|1|5|U|759
5DAT|1|5|G|760
5DAT|1|5|A|761
5DAT|1|5|U|762
5DAT|1|5|G|763
*
5DAT|1|5|C|768
5DAT|1|5|G|769
5DAT|1|5|G|770
5DAT|1|5|A|771
5DAT|1|5|U|772
5DAT|1|5|G|773

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain m3

60S ribosomal protein L13-A

Chain n8

60S ribosomal protein L28

Chain q2

60S ribosomal protein L42-A