IL_5DAT_260

3D structure

PDB id

5DAT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing eIF5A

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

AU*AAU

Length

5 nucleotides

Bulged bases

5DAT|1|5|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DAT_260 not in the Motif Atlas

Geometric match to IL_7A0S_016

Geometric discrepancy: 0.1284

The information below is about IL_7A0S_016

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

5DAT|1|5|A|828
5DAT|1|5|U|829
*
5DAT|1|5|A|895
5DAT|1|5|A|896
5DAT|1|5|U|897

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain l2

60S ribosomal protein L2-A

Chain o4

60S ribosomal protein L34-A (eL34)

Chain q3

60S ribosomal protein L43-A