IL_5DAT_260
3D structure
- PDB id
- 5DAT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with hypusine-containing eIF5A
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- AU*AAU
- Length
- 5 nucleotides
- Bulged bases
- 5DAT|1|5|A|896
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5DAT_260 not in the Motif Atlas
- Geometric match to IL_7A0S_016
- Geometric discrepancy: 0.1284
- The information below is about IL_7A0S_016
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.6
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 130
Unit IDs
5DAT|1|5|A|828
5DAT|1|5|U|829
*
5DAT|1|5|A|895
5DAT|1|5|A|896
5DAT|1|5|U|897
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain l2
- 60S ribosomal protein L2-A
- Chain o4
- 60S ribosomal protein L34-A (eL34)
- Chain q3
- 60S ribosomal protein L43-A
Coloring options: