3D structure

PDB id
5DAT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex of yeast 80S ribosome with hypusine-containing eIF5A
Experimental method
X-RAY DIFFRACTION
Resolution
3.15 Å

Loop

Sequence
GUGGC*GAAUC
Length
10 nucleotides
Bulged bases
5DAT|1|5|G|1236
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5DAT_286 not in the Motif Atlas
Homologous match to IL_8C3A_058
Geometric discrepancy: 0.3343
The information below is about IL_8C3A_058
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_30542.5
Basepair signature
cWW-L-R-L-R-L-cWW
Number of instances in this motif group
2

Unit IDs

5DAT|1|5|G|1234
5DAT|1|5|U|1235
5DAT|1|5|G|1236
5DAT|1|5|G|1237
5DAT|1|5|C|1238
*
5DAT|1|5|G|1250
5DAT|1|5|A|1251
5DAT|1|5|A|1252
5DAT|1|5|U|1253
5DAT|1|5|C|1254

Current chains

Chain 5
25S ribosomal RNA

Nearby chains

Chain m2
60S ribosomal protein L12-A (uL11)
Chain p0
60S acidic ribosomal protein P0

Coloring options:


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