IL_5DAT_286
3D structure
- PDB id
- 5DAT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with hypusine-containing eIF5A
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- GUGGC*GAAUC
- Length
- 10 nucleotides
- Bulged bases
- 5DAT|1|5|G|1236
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5DAT_286 not in the Motif Atlas
- Homologous match to IL_8C3A_058
- Geometric discrepancy: 0.3343
- The information below is about IL_8C3A_058
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_30542.5
- Basepair signature
- cWW-L-R-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
5DAT|1|5|G|1234
5DAT|1|5|U|1235
5DAT|1|5|G|1236
5DAT|1|5|G|1237
5DAT|1|5|C|1238
*
5DAT|1|5|G|1250
5DAT|1|5|A|1251
5DAT|1|5|A|1252
5DAT|1|5|U|1253
5DAT|1|5|C|1254
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain m2
- 60S ribosomal protein L12-A (uL11)
- Chain p0
- 60S acidic ribosomal protein P0
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