IL_5DAT_287

3D structure

PDB id

5DAT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing eIF5A

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

5DAT|1|5|A|1263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DAT_287 not in the Motif Atlas

Homologous match to IL_8C3A_059

Geometric discrepancy: 0.2497

The information below is about IL_8C3A_059

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

5DAT|1|5|G|1262
5DAT|1|5|A|1263
5DAT|1|5|G|1264
5DAT|1|5|U|1265
5DAT|1|5|G|1266
*
5DAT|1|5|C|1275
5DAT|1|5|U|1276
5DAT|1|5|C|1277

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain m2

60S ribosomal protein L12-A (uL11)