IL_5DAT_315

3D structure

PDB id

5DAT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing eIF5A

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CCAG*CG

Length

6 nucleotides

Bulged bases

5DAT|1|5|C|2197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DAT_315 not in the Motif Atlas

Homologous match to IL_5TBW_084

Geometric discrepancy: 0.1013

The information below is about IL_5TBW_084

Detailed Annotation

Major groove intercalation

Broad Annotation

No text annotation

Motif group

IL_88739.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

5DAT|1|5|C|2196
5DAT|1|5|C|2197
5DAT|1|5|A|2198
5DAT|1|5|G|2199
*
5DAT|1|5|C|2245
5DAT|1|5|G|2246

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain 6

Small subunit ribosomal RNA; SSU rRNA

Chain f

Eukaryotic translation initiation factor 5A-1

Chain l2

60S ribosomal protein L2-A