IL_5DAT_317

3D structure

PDB id

5DAT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing eIF5A

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

5DAT|1|5|U|2205

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DAT_317 not in the Motif Atlas

Geometric match to IL_5TBW_025

Geometric discrepancy: 0.2667

The information below is about IL_5TBW_025

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

5DAT|1|5|C|2204
5DAT|1|5|U|2205
5DAT|1|5|G|2206
*
5DAT|1|5|C|2237
5DAT|1|5|G|2238

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain 6

Small subunit ribosomal RNA; SSU rRNA

Chain f

Eukaryotic translation initiation factor 5A-1

Chain l2

60S ribosomal protein L2-A