IL_5DAT_331

3D structure

PDB id

5DAT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing eIF5A

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GAU*AC

Length

5 nucleotides

Bulged bases

5DAT|1|5|A|2715

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DAT_331 not in the Motif Atlas

Geometric match to IL_5WWT_001

Geometric discrepancy: 0.2584

The information below is about IL_5WWT_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

5DAT|1|5|G|2714
5DAT|1|5|A|2715
5DAT|1|5|U|2716
*
5DAT|1|5|A|2740
5DAT|1|5|C|2741

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain n9

60S ribosomal protein L29

Chain q2

60S ribosomal protein L42-A