IL_5DAT_405

3D structure

PDB id

5DAT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing eIF5A

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CCUUG*CUUGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DAT_405 not in the Motif Atlas

Geometric match to IL_8S95_002

Geometric discrepancy: 0.3165

The information below is about IL_8S95_002

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

5DAT|1|6|C|708
5DAT|1|6|C|709
5DAT|1|6|U|710
5DAT|1|6|U|711
5DAT|1|6|G|712
*
5DAT|1|6|C|726
5DAT|1|6|U|727
5DAT|1|6|U|728
5DAT|1|6|G|729
5DAT|1|6|G|730

Current chains

Chain 6

18S ribosomal RNA

Nearby chains