IL_5DAT_415
3D structure
- PDB id
- 5DAT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with hypusine-containing eIF5A
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- UUGUCAG*CUUGGAUUUA
- Length
- 17 nucleotides
- Bulged bases
- 5DAT|1|6|G|913
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5DAT_415 not in the Motif Atlas
- Homologous match to IL_8C3A_440
- Geometric discrepancy: 0.2722
- The information below is about IL_8C3A_440
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_22252.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
5DAT|1|6|U|893
5DAT|1|6|U|894
5DAT|1|6|G|895
5DAT|1|6|U|896
5DAT|1|6|C|897
5DAT|1|6|A|898
5DAT|1|6|G|899
*
5DAT|1|6|C|910
5DAT|1|6|U|911
5DAT|1|6|U|912
5DAT|1|6|G|913
5DAT|1|6|G|914
5DAT|1|6|A|915
5DAT|1|6|U|916
5DAT|1|6|U|917
5DAT|1|6|U|918
5DAT|1|6|A|919
Current chains
- Chain 6
- 18S ribosomal RNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain c4
- 40S ribosomal protein S14-A
- Chain l2
- 60S ribosomal protein L2-A
- Chain s1
- 40S ribosomal protein S1-A
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