IL_5DAT_425
3D structure
- PDB id
- 5DAT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with hypusine-containing eIF5A
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- CCU*GCG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5DAT_425 not in the Motif Atlas
- Homologous match to IL_4V88_444
- Geometric discrepancy: 0.0844
- The information below is about IL_4V88_444
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
5DAT|1|6|C|1173
5DAT|1|6|C|1174
5DAT|1|6|U|1175
*
5DAT|1|6|G|1464
5DAT|1|6|C|1465
5DAT|1|6|G|1466
Current chains
- Chain 6
- 18S ribosomal RNA
Nearby chains
- Chain c6
- 40S ribosomal protein S16-A
- Chain c8
- 40S ribosomal protein S18-A
- Chain c9
- 40S ribosomal protein S19-A
- Chain d0
- 40S ribosomal protein S20
Coloring options: