IL_5DAT_477

3D structure

PDB id

5DAT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing eIF5A

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GAUACA*UGUAAUU

Length

13 nucleotides

Bulged bases

5DAT|1|2|A|506, 5DAT|1|2|U|507

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DAT|1|2|G|480
5DAT|1|2|A|481
5DAT|1|2|U|482
5DAT|1|2|A|483
5DAT|1|2|C|484
5DAT|1|2|A|485
*
5DAT|1|2|U|502
5DAT|1|2|G|503
5DAT|1|2|U|504
5DAT|1|2|A|505
5DAT|1|2|A|506
5DAT|1|2|U|507
5DAT|1|2|U|508

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E0

40S ribosomal protein S30-A

Chain S9

40S ribosomal protein S9-A