3D structure

PDB id
5DAT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex of yeast 80S ribosome with hypusine-containing eIF5A
Experimental method
X-RAY DIFFRACTION
Resolution
3.15 Å

Loop

Sequence
CGUAU*AAG
Length
8 nucleotides
Bulged bases
5DAT|1|5|A|1103
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5DAT_507 not in the Motif Atlas
Homologous match to IL_8P9A_264
Geometric discrepancy: 0.2906
The information below is about IL_8P9A_264
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_25463.1
Basepair signature
cWW-L-cWW-L-L
Number of instances in this motif group
2

Unit IDs

5DAT|1|5|C|977
5DAT|1|5|G|978
5DAT|1|5|U|979
5DAT|1|5|A|980
5DAT|1|5|U|981
*
5DAT|1|5|A|1102
5DAT|1|5|A|1103
5DAT|1|5|G|1104

Current chains

Chain 5
25S ribosomal RNA

Nearby chains

Chain l7
60S ribosomal protein L7-A
Chain m8
60S ribosomal protein L18-A
Chain n9
60S ribosomal protein L29

Coloring options:


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