IL_5DC3_010
3D structure
- PDB id
- 5DC3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with non-modified eIF5A
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.25 Å
Loop
- Sequence
- UG*UUUGUA
- Length
- 8 nucleotides
- Bulged bases
- 5DC3|1|1|U|252
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5DC3_010 not in the Motif Atlas
- Homologous match to IL_5TBW_010
- Geometric discrepancy: 0.2466
- The information below is about IL_5TBW_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_37379.1
- Basepair signature
- cWW-L-cWW-L-L
- Number of instances in this motif group
- 1
Unit IDs
5DC3|1|1|U|169
5DC3|1|1|G|170
*
5DC3|1|1|U|248
5DC3|1|1|U|249
5DC3|1|1|U|250
5DC3|1|1|G|251
5DC3|1|1|U|252
5DC3|1|1|A|253
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain L8
- 60S ribosomal protein L8-A
- Chain M3
- 60S ribosomal protein L13-A
- Chain O5
- 60S ribosomal protein L35-A
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