IL_5DC3_191

3D structure

PDB id

5DC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with non-modified eIF5A

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CAAUAAGGA*UUUUG

Length

14 nucleotides

Bulged bases

5DC3|1|2|G|1228

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DC3|1|2|C|1222
5DC3|1|2|A|1223
5DC3|1|2|A|1224
5DC3|1|2|U|1225
5DC3|1|2|A|1226
5DC3|1|2|A|1227
5DC3|1|2|G|1228
5DC3|1|2|G|1229
5DC3|1|2|A|1230
*
5DC3|1|2|U|1257
5DC3|1|2|U|1258
5DC3|1|2|U|1259
5DC3|1|2|U|1260
5DC3|1|2|G|1261

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C0

40S ribosomal protein S10-A

Chain C2

40S ribosomal protein S12

Chain E1

Ubiquitin-40S ribosomal protein S31