IL_5DC3_247

3D structure

PDB id

5DC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with non-modified eIF5A

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

AGACAUGGCUGGG*CAUAAU

Length

19 nucleotides

Bulged bases

5DC3|1|5|U|620

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DC3|1|5|A|436
5DC3|1|5|G|437
5DC3|1|5|A|438
5DC3|1|5|C|439
5DC3|1|5|A|440
5DC3|1|5|U|441
5DC3|1|5|G|442
5DC3|1|5|G|443
5DC3|1|5|C|491
5DC3|1|5|U|492
5DC3|1|5|G|493
5DC3|1|5|G|494
5DC3|1|5|G|495
*
5DC3|1|5|C|618
5DC3|1|5|A|619
5DC3|1|5|U|620
5DC3|1|5|A|621
5DC3|1|5|A|622
5DC3|1|5|U|623

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain l6

60S ribosomal protein L6-A

Chain o2

60S ribosomal protein L32

Chain o3

60S ribosomal protein L33-A