IL_5DC3_272

3D structure

PDB id

5DC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with non-modified eIF5A

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

AUUA*UUCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DC3_272 not in the Motif Atlas

Geometric match to IL_5TBW_041

Geometric discrepancy: 0.0879

The information below is about IL_5TBW_041

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

5DC3|1|5|A|1006
5DC3|1|5|U|1007
5DC3|1|5|U|1008
5DC3|1|5|A|1009
*
5DC3|1|5|U|1041
5DC3|1|5|U|1042
5DC3|1|5|C|1043
5DC3|1|5|U|1044

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain l5

60S ribosomal protein L5

Chain m0

60S ribosomal protein L10