IL_5DC3_289
3D structure
- PDB id
- 5DC3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with non-modified eIF5A
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.25 Å
Loop
- Sequence
- UGACGAAG*UCGAA
- Length
- 13 nucleotides
- Bulged bases
- 5DC3|1|5|C|1391
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5DC3_289 not in the Motif Atlas
- Homologous match to IL_5TBW_059
- Geometric discrepancy: 0.0625
- The information below is about IL_5TBW_059
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.5
- Basepair signature
- cWW-cWW-tSS-tSH-tHS-cWW-tHS
- Number of instances in this motif group
- 32
Unit IDs
5DC3|1|5|U|1388
5DC3|1|5|G|1389
5DC3|1|5|A|1390
5DC3|1|5|C|1391
5DC3|1|5|G|1392
5DC3|1|5|A|1393
5DC3|1|5|A|1394
5DC3|1|5|G|1395
*
5DC3|1|5|U|1415
5DC3|1|5|C|1416
5DC3|1|5|G|1417
5DC3|1|5|A|1418
5DC3|1|5|A|1419
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain l4
- 60S ribosomal protein L4-A
- Chain l6
- 60S ribosomal protein L6-A
- Chain m7
- 60S ribosomal protein L17-A
- Chain n6
- 60S ribosomal protein L26-A
- Chain o2
- 60S ribosomal protein L32
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