IL_5DC3_470

3D structure

PDB id

5DC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with non-modified eIF5A

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CGUAU*AAG

Length

8 nucleotides

Bulged bases

5DC3|1|1|A|1103

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DC3_470 not in the Motif Atlas

Homologous match to IL_8P9A_264

Geometric discrepancy: 0.2056

The information below is about IL_8P9A_264

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25463.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

5DC3|1|1|C|977
5DC3|1|1|G|978
5DC3|1|1|U|979
5DC3|1|1|A|980
5DC3|1|1|U|981
*
5DC3|1|1|A|1102
5DC3|1|1|A|1103
5DC3|1|1|G|1104

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain L7

60S ribosomal protein L7-A

Chain M8

60S ribosomal protein L18-A

Chain N9

60S ribosomal protein L29