IL_5DC3_476
3D structure
- PDB id
- 5DC3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with non-modified eIF5A
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.25 Å
Loop
- Sequence
- CAUA*UAAGCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5DC3_476 not in the Motif Atlas
- Homologous match to IL_8P9A_338
- Geometric discrepancy: 0.0768
- The information below is about IL_8P9A_338
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_07469.3
- Basepair signature
- cWW-tSH-cWW-cSH-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
5DC3|1|1|C|2889
5DC3|1|1|A|2890
5DC3|1|1|U|2891
5DC3|1|1|A|2892
*
5DC3|1|1|U|2909
5DC3|1|1|A|2910
5DC3|1|1|A|2911
5DC3|1|1|G|2912
5DC3|1|1|C|2913
5DC3|1|1|G|2914
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain L3
- 60S ribosomal protein L3
- Chain L9
- 60S ribosomal protein L9-A
- Chain N3
- 60S ribosomal protein L23-A
- Chain Q0
- Ubiquitin-60S ribosomal protein L40
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