IL_5DC3_489

3D structure

PDB id

5DC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with non-modified eIF5A

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

5DC3|1|5|U|2860

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DC3_489 not in the Motif Atlas

Homologous match to IL_8P9A_332

Geometric discrepancy: 0.0926

The information below is about IL_8P9A_332

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

5DC3|1|5|G|2828
5DC3|1|5|U|2829
5DC3|1|5|G|2830
*
5DC3|1|5|U|2858
5DC3|1|5|U|2859
5DC3|1|5|U|2860
5DC3|1|5|U|2861
5DC3|1|5|U|2862

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain l3

60S ribosomal protein L3

Chain m0

60S ribosomal protein L10