IL_5DC3_494

3D structure

PDB id

5DC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with non-modified eIF5A

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GAC*GUAC

Length

7 nucleotides

Bulged bases

5DC3|1|6|A|1631

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DC3_494 not in the Motif Atlas

Geometric match to IL_2O3X_003

Geometric discrepancy: 0.1738

The information below is about IL_2O3X_003

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

5DC3|1|6|G|1146
5DC3|1|6|A|1147
5DC3|1|6|C|1148
*
5DC3|1|6|G|1629
5DC3|1|6|U|1630
5DC3|1|6|A|1631
5DC3|1|6|C|1632

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain d6

40S ribosomal protein S26-B

Chain s2

40S ribosomal protein S2