IL_5DFE_001
3D structure
- PDB id
- 5DFE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S termination complex containing E. coli RF2
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UGA*UA
- Length
- 5 nucleotides
- Bulged bases
- 5DFE|1|QA|G|31
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5DFE_001 not in the Motif Atlas
- Homologous match to IL_4LFB_001
- Geometric discrepancy: 0.0853
- The information below is about IL_4LFB_001
- Detailed Annotation
- Single bulged G
- Broad Annotation
- No text annotation
- Motif group
- IL_28408.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 60
Unit IDs
5DFE|1|QA|U|30
5DFE|1|QA|G|31
5DFE|1|QA|A|32
*
5DFE|1|QA|U|552
5DFE|1|QA|A|553
Current chains
- Chain QA
- 16S rRNA
Nearby chains
- Chain QL
- 30S ribosomal protein S12
Coloring options: