3D structure

PDB id
5DFE (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S termination complex containing E. coli RF2
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GGAAGAAG*UGUAAAC
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5DFE_017 not in the Motif Atlas
Homologous match to IL_4LFB_017
Geometric discrepancy: 0.0963
The information below is about IL_4LFB_017
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_62329.1
Basepair signature
cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW
Number of instances in this motif group
2

Unit IDs

5DFE|1|QA|G|409
5DFE|1|QA|G|410
5DFE|1|QA|A|411
5DFE|1|QA|A|412
5DFE|1|QA|G|413
5DFE|1|QA|A|414
5DFE|1|QA|A|415
5DFE|1|QA|G|416
*
5DFE|1|QA|U|427
5DFE|1|QA|G|428
5DFE|1|QA|U|429
5DFE|1|QA|A|430
5DFE|1|QA|A|431
5DFE|1|QA|A|432
5DFE|1|QA|C|433

Current chains

Chain QA
16S rRNA

Nearby chains

Chain QD
30S ribosomal protein S4
Chain YA
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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