IL_5DFE_017

3D structure

PDB id

5DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex containing E. coli RF2

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DFE_017 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.0963

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

5DFE|1|QA|G|409
5DFE|1|QA|G|410
5DFE|1|QA|A|411
5DFE|1|QA|A|412
5DFE|1|QA|G|413
5DFE|1|QA|A|414
5DFE|1|QA|A|415
5DFE|1|QA|G|416
*
5DFE|1|QA|U|427
5DFE|1|QA|G|428
5DFE|1|QA|U|429
5DFE|1|QA|A|430
5DFE|1|QA|A|431
5DFE|1|QA|A|432
5DFE|1|QA|C|433

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QD

30S ribosomal protein S4

Chain YA

Large subunit ribosomal RNA; LSU rRNA