IL_5DFE_058

3D structure

PDB id

5DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex containing E. coli RF2

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAAG*CGAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DFE_058 not in the Motif Atlas

Homologous match to IL_4LFB_062

Geometric discrepancy: 0.0854

The information below is about IL_4LFB_062

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_77691.5

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

5DFE|1|QA|C|1431
5DFE|1|QA|G|1432
5DFE|1|QA|A|1433
5DFE|1|QA|A|1434
5DFE|1|QA|G|1435
*
5DFE|1|QA|C|1466
5DFE|1|QA|G|1467
5DFE|1|QA|A|1468
5DFE|1|QA|G|1469

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QT

30S ribosomal protein S20

Chain RA

Large subunit ribosomal RNA; LSU rRNA

Chain RT

50S ribosomal protein L19