IL_5DFE_102

3D structure

PDB id

5DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex containing E. coli RF2

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

5DFE|1|RA|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DFE_102 not in the Motif Atlas

Geometric match to IL_7RQB_022

Geometric discrepancy: 0.3456

The information below is about IL_7RQB_022

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_05564.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

14

Unit IDs

5DFE|1|RA|G|1087
5DFE|1|RA|A|1088
5DFE|1|RA|G|1089
5DFE|1|RA|U|1090
5DFE|1|RA|G|1091
*
5DFE|1|RA|C|1100
5DFE|1|RA|U|1101
5DFE|1|RA|C|1102

Current chains

Chain RA

T23S rRNA

Nearby chains

Chain R9

50S ribosomal protein L36