IL_5DFE_135

3D structure

PDB id

5DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex containing E. coli RF2

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAAA(5MU)UC(5MC)UUG*C(5MC)UG

Length

16 nucleotides

Bulged bases

5DFE|1|RA|A|1938, 5DFE|1|RA|C|1941, 5DFE|1|RA|U|1944, 5DFE|1|RA|U|1963

QA status

Modified nucleotides: 5MU, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DFE_135 not in the Motif Atlas

Homologous match to IL_7RQB_077

Geometric discrepancy: 0.0544

The information below is about IL_7RQB_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DFE|1|RA|C|1934
5DFE|1|RA|G|1935
5DFE|1|RA|A|1936
5DFE|1|RA|A|1937
5DFE|1|RA|A|1938
5DFE|1|RA|5MU|1939
5DFE|1|RA|U|1940
5DFE|1|RA|C|1941
5DFE|1|RA|5MC|1942
5DFE|1|RA|U|1943
5DFE|1|RA|U|1944
5DFE|1|RA|G|1945
*
5DFE|1|RA|C|1961
5DFE|1|RA|5MC|1962
5DFE|1|RA|U|1963
5DFE|1|RA|G|1964

Current chains

Chain RA

T23S rRNA

Nearby chains

Chain QA

Small subunit ribosomal RNA; SSU rRNA

Chain QY

Peptide chain release factor 2

Chain RD

50S ribosomal protein L2