IL_5DFE_213

3D structure

PDB id

5DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex containing E. coli RF2

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

5DFE|1|XA|U|1049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DFE_213 not in the Motif Atlas

Geometric match to IL_4LFB_042

Geometric discrepancy: 0.0761

The information below is about IL_4LFB_042

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

5DFE|1|XA|G|1048
5DFE|1|XA|U|1049
5DFE|1|XA|G|1050
*
5DFE|1|XA|C|1208
5DFE|1|XA|C|1209

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XN

30S ribosomal protein S14 type Z

Chain XY

Peptide chain release factor 2