3D structure

PDB id
5DFE (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S termination complex containing E. coli RF2
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CUGC*GAGGAAG
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5DFE_221 not in the Motif Atlas
Homologous match to IL_5J7L_053
Geometric discrepancy: 0.121
The information below is about IL_5J7L_053
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_42032.1
Basepair signature
cWW-cSH-cWW-tWH-L-cWW-L-L
Number of instances in this motif group
2

Unit IDs

5DFE|1|XA|C|1158
5DFE|1|XA|U|1159
5DFE|1|XA|G|1160
5DFE|1|XA|C|1161
*
5DFE|1|XA|G|1175
5DFE|1|XA|A|1176
5DFE|1|XA|G|1177
5DFE|1|XA|G|1178
5DFE|1|XA|A|1179
5DFE|1|XA|A|1180
5DFE|1|XA|G|1181

Current chains

Chain XA
16S rRNA

Nearby chains

Chain QJ
30S ribosomal protein S10
Chain XB
30S ribosomal protein S2
Chain XG
30S ribosomal protein S7
Chain XI
30S ribosomal protein S9

Coloring options:


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