IL_5DFE_258

3D structure

PDB id

5DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex containing E. coli RF2

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGC*GGAG

Length

7 nucleotides

Bulged bases

5DFE|1|YA|G|932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DFE_258 not in the Motif Atlas

Homologous match to IL_7RQB_025

Geometric discrepancy: 0.0656

The information below is about IL_7RQB_025

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_52767.4

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

5DFE|1|YA|C|844
5DFE|1|YA|G|845
5DFE|1|YA|C|846
*
5DFE|1|YA|G|931
5DFE|1|YA|G|932
5DFE|1|YA|A|933
5DFE|1|YA|G|934

Current chains

Chain YA

T23S rRNA

Nearby chains

Chain Y3

50S ribosomal protein L30