IL_5DFE_271

3D structure

PDB id

5DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex containing E. coli RF2

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

5DFE|1|YA|U|1012

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DFE_271 not in the Motif Atlas

Geometric match to IL_7RQB_038

Geometric discrepancy: 0.0811

The information below is about IL_7RQB_038

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.16

Basepair signature

cWW-L-cWW

Number of instances in this motif group

116

Unit IDs

5DFE|1|YA|G|1011
5DFE|1|YA|U|1012
5DFE|1|YA|C|1013
*
5DFE|1|YA|G|1149
5DFE|1|YA|C|1150

Current chains

Chain YA

T23S rRNA

Nearby chains

Chain YN

50S ribosomal protein L13

Chain YU

50S ribosomal protein L20