IL_5DFE_275
3D structure
- PDB id
- 5DFE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S termination complex containing E. coli RF2
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAAGACAG*UCGAG
- Length
- 14 nucleotides
- Bulged bases
- 5DFE|1|YA|A|1046
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5DFE_275 not in the Motif Atlas
- Homologous match to IL_7RQB_042
- Geometric discrepancy: 0.3047
- The information below is about IL_7RQB_042
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_90538.4
- Basepair signature
- cWW-tSS-tSH-L-tHS-R-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
5DFE|1|YA|C|1043
5DFE|1|YA|G|1044
5DFE|1|YA|A|1045
5DFE|1|YA|A|1046
5DFE|1|YA|G|1047
5DFE|1|YA|A|1048
5DFE|1|YA|C|1049
5DFE|1|YA|A|1050
5DFE|1|YA|G|1051
*
5DFE|1|YA|U|1108
5DFE|1|YA|C|1109
5DFE|1|YA|G|1110
5DFE|1|YA|A|1111
5DFE|1|YA|G|1112
Current chains
- Chain YA
- T23S rRNA
Nearby chains
- Chain YH
- 50S ribosomal protein L6
Coloring options: