IL_5DFE_292

3D structure

PDB id

5DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex containing E. coli RF2

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AGAAG*UGGU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DFE_292 not in the Motif Atlas

Homologous match to IL_7RQB_060

Geometric discrepancy: 0.0771

The information below is about IL_7RQB_060

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_07235.1

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

5DFE|1|YA|A|1469
5DFE|1|YA|G|1470
5DFE|1|YA|A|1471
5DFE|1|YA|A|1472
5DFE|1|YA|G|1473
*
5DFE|1|YA|U|1518
5DFE|1|YA|G|1519
5DFE|1|YA|G|1520
5DFE|1|YA|U|1523

Current chains

Chain YA

T23S rRNA

Nearby chains