IL_5DFE_313

3D structure

PDB id

5DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex containing E. coli RF2

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

5DFE|1|YA|A|2439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DFE_313 not in the Motif Atlas

Homologous match to IL_5J7L_324

Geometric discrepancy: 0.0718

The information below is about IL_5J7L_324

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.2

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

44

Unit IDs

5DFE|1|YA|G|2070
5DFE|1|YA|A|2071
*
5DFE|1|YA|U|2438
5DFE|1|YA|A|2439
5DFE|1|YA|C|2440
5DFE|1|YA|C|2441

Current chains

Chain YA

T23S rRNA

Nearby chains

Chain XV

Transfer RNA; tRNA

Chain YD

50S ribosomal protein L2