IL_5DFE_325

3D structure

PDB id

5DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex containing E. coli RF2

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGA*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DFE_325 not in the Motif Atlas

Geometric match to IL_4WF9_091

Geometric discrepancy: 0.1324

The information below is about IL_4WF9_091

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.7

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

40

Unit IDs

5DFE|1|YA|U|2457
5DFE|1|YA|G|2458
5DFE|1|YA|A|2459
*
5DFE|1|YA|U|2493
5DFE|1|YA|G|2494

Current chains

Chain YA

T23S rRNA

Nearby chains

Chain XY

Peptide chain release factor 2

Chain YQ

50S ribosomal protein L16