IL_5DFE_329

3D structure

PDB id

5DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex containing E. coli RF2

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

5DFE|1|YA|G|2576, 5DFE|1|YA|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DFE_329 not in the Motif Atlas

Geometric match to IL_7RQB_097

Geometric discrepancy: 0.0671

The information below is about IL_7RQB_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_90933.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

11

Unit IDs

5DFE|1|YA|C|2510
5DFE|1|YA|U|2511
5DFE|1|YA|C|2512
*
5DFE|1|YA|G|2574
5DFE|1|YA|C|2575
5DFE|1|YA|G|2576
5DFE|1|YA|A|2577
5DFE|1|YA|G|2578

Current chains

Chain YA

T23S rRNA

Nearby chains

Chain XY

Peptide chain release factor 2

Chain Y5

50S ribosomal protein L32

Chain YE

50S ribosomal protein L3