IL_5DFE_355

3D structure

PDB id

5DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex containing E. coli RF2

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGAACUCUG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DFE_355 not in the Motif Atlas

Homologous match to IL_9DFE_066

Geometric discrepancy: 0.0569

The information below is about IL_9DFE_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

5DFE|1|RA|G|1666
5DFE|1|RA|G|1667
5DFE|1|RA|A|1668
5DFE|1|RA|A|1669
5DFE|1|RA|C|1670
5DFE|1|RA|U|1671
5DFE|1|RA|C|1672
5DFE|1|RA|U|1673
5DFE|1|RA|G|1674
*
5DFE|1|RA|C|1990
5DFE|1|RA|U|1991
5DFE|1|RA|G|1992
5DFE|1|RA|U|1993
5DFE|1|RA|C|1994

Current chains

Chain RA

T23S rRNA

Nearby chains

Chain RE

50S ribosomal protein L3

Chain RO

50S ribosomal protein L14