IL_5DGE_119

3D structure

PDB id

5DGE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CACAC*GCGUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DGE_119 not in the Motif Atlas

Geometric match to IL_7VYX_004

Geometric discrepancy: 0.3309

The information below is about IL_7VYX_004

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

5DGE|1|1|C|3162
5DGE|1|1|A|3163
5DGE|1|1|C|3164
5DGE|1|1|A|3165
5DGE|1|1|C|3166
*
5DGE|1|1|G|3284
5DGE|1|1|C|3285
5DGE|1|1|G|3286
5DGE|1|1|U|3287
5DGE|1|1|G|3288

Current chains

Chain 1

25S ribosomal RNA

Nearby chains