IL_5DGE_152

3D structure

PDB id

5DGE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GGCC*GUGCU

Length

9 nucleotides

Bulged bases

5DGE|1|2|U|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DGE_152 not in the Motif Atlas

Geometric match to IL_6CZR_168

Geometric discrepancy: 0.3388

The information below is about IL_6CZR_168

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67743.1

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

9

Unit IDs

5DGE|1|2|G|273
5DGE|1|2|G|274
5DGE|1|2|C|275
5DGE|1|2|C|276
*
5DGE|1|2|G|279
5DGE|1|2|U|280
5DGE|1|2|G|281
5DGE|1|2|C|282
5DGE|1|2|U|283

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S6

40S ribosomal protein S6-A