IL_5DGE_160

3D structure

PDB id

5DGE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GAUACAG*UUGUAAUU

Length

15 nucleotides

Bulged bases

5DGE|1|2|A|506

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DGE|1|2|G|480
5DGE|1|2|A|481
5DGE|1|2|U|482
5DGE|1|2|A|483
5DGE|1|2|C|484
5DGE|1|2|A|485
5DGE|1|2|G|486
*
5DGE|1|2|U|501
5DGE|1|2|U|502
5DGE|1|2|G|503
5DGE|1|2|U|504
5DGE|1|2|A|505
5DGE|1|2|A|506
5DGE|1|2|U|507
5DGE|1|2|U|508

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E0

40S ribosomal protein S30-A

Chain S9

40S ribosomal protein S9-A