IL_5DGE_242

3D structure

PDB id

5DGE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

UGGGGC*GUUCUUUGUA

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DGE|1|5|U|169
5DGE|1|5|G|170
5DGE|1|5|G|171
5DGE|1|5|G|172
5DGE|1|5|G|173
5DGE|1|5|C|174
*
5DGE|1|5|G|244
5DGE|1|5|U|245
5DGE|1|5|U|246
5DGE|1|5|C|247
5DGE|1|5|U|248
5DGE|1|5|U|249
5DGE|1|5|U|250
5DGE|1|5|G|251
5DGE|1|5|U|252
5DGE|1|5|A|253

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain M3

60S ribosomal protein L13-A

Chain l8

60S ribosomal protein L8-A

Chain m3

60S ribosomal protein L13-A

Chain o5

60S ribosomal protein L35-A