IL_5DGE_299

3D structure

PDB id

5DGE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GG*UUUC

Length

6 nucleotides

Bulged bases

5DGE|1|5|U|1820, 5DGE|1|5|U|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DGE_299 not in the Motif Atlas

Geometric match to IL_4YAZ_007

Geometric discrepancy: 0.1963

The information below is about IL_4YAZ_007

Detailed Annotation

Multiple bulged bases

Broad Annotation

Multiple bulged bases

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

5DGE|1|5|G|1623
5DGE|1|5|G|1624
*
5DGE|1|5|U|1819
5DGE|1|5|U|1820
5DGE|1|5|U|1821
5DGE|1|5|C|1822

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain o4

60S ribosomal protein L34-A