IL_5DGE_347

3D structure

PDB id

5DGE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

5DGE|1|5|A|2971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DGE_347 not in the Motif Atlas

Geometric match to IL_7RQB_101

Geometric discrepancy: 0.2153

The information below is about IL_7RQB_101

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_37497.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

118

Unit IDs

5DGE|1|5|C|2960
5DGE|1|5|G|2961
*
5DGE|1|5|C|2970
5DGE|1|5|A|2971
5DGE|1|5|G|2972

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain C

DNA (5'-R(*CP*CP*(NA))-3')

Chain f

Eukaryotic translation initiation factor 5A-1

Chain l2

60S ribosomal protein L2-A

Chain m0

60S ribosomal protein L10