IL_5DGE_383

3D structure

PDB id

5DGE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GUAUU*ACUUUUC

Length

12 nucleotides

Bulged bases

5DGE|1|6|U|260

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DGE|1|6|G|204
5DGE|1|6|U|205
5DGE|1|6|A|206
5DGE|1|6|U|207
5DGE|1|6|U|208
*
5DGE|1|6|A|257
5DGE|1|6|C|258
5DGE|1|6|U|259
5DGE|1|6|U|260
5DGE|1|6|U|261
5DGE|1|6|U|262
5DGE|1|6|C|263

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain s4

40S ribosomal protein S4-A

Chain s8

40S ribosomal protein S8-A