IL_5DGE_402

3D structure

PDB id

5DGE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

UGGC*GAUUUCCA

Length

12 nucleotides

Bulged bases

5DGE|1|6|U|681

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DGE_402 not in the Motif Atlas

Geometric match to IL_4V88_518

Geometric discrepancy: 0.2794

The information below is about IL_4V88_518

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06083.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L

Number of instances in this motif group

1

Unit IDs

5DGE|1|6|U|650
5DGE|1|6|G|651
5DGE|1|6|G|652
5DGE|1|6|C|653
*
5DGE|1|6|G|677
5DGE|1|6|A|678
5DGE|1|6|U|679
5DGE|1|6|U|680
5DGE|1|6|U|681
5DGE|1|6|C|682
5DGE|1|6|C|683
5DGE|1|6|A|684

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain s9

40S ribosomal protein S9-A